Author

Alexander Baumann

Broad Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:GWAS / association mapping· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Eric BanksiD· 3 shared Anne O’Donnell‐LuriaiD· 2 shared Anthony PhilippakisiD· 2 shared Kristian CibulskisiD· 2 shared Namrata GuptaiD· 2 shared Ruchi Munshi· 2 shared Adolfo CorreaiD· 1 shared Alessandro CulottiiD· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersBioinformatics

Eric BanksORCID

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3 papers

Recent·Most cited

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, , Jason Walker

The paper describes AnVIL, a cloud-based platform that enables genomic data analysis without data transfer, improving security, scalability, and collaboration.

Cell Genomics · Jan 1, 2022Peer-reviewedBioinformatics

An open resource of structural variation for medical and population genetics

Ryan L. Collins, Harrison Brand, Konrad J. Karczewski, Xuefang Zhao, Jessica Alföldi, Laurent C. Francioli, Amit V. Khera, Chelsea Lowther, Laura Doyle Gauthier, Harold Wang, Nicholas A. Watts, Matthew Solomonson, Anne O’Donnell‐Luria, Alexander Baumann, Ruchi Munshi, , Adolfo Correa

Short-read genome sequencing of 14,891 diverse genomes yields 433,371 structural variants (SVs) for gnomAD; loss-constrained genes also resist duplication, and clinical SV carrier rates are benchmarked.

Nature · May 27, 2020Peer-reviewedGenomics✦ In-depth digest

FireCloud, a scalable cloud-based platform for collaborative genome analysis: Strategies for reducing and controlling costs

Chet Birger, Megan Hanna, Edward A. Salinas, Jason Neff, Gordon Saksena, Dimitri G. Livitz, Daniel Rosebrock, Chip Stewart, Ignaty Leshchiner, Alexander Baumann, Douglas Voet, Kristian Cibulskis, Eric Banks, Anthony Philippakis, Gad A. Getz

Four levers for cheaper cloud genomics on FireCloud: size virtual disks dynamically, tune VM provisioning from monitoring data, buy preemptible machines, and parallelise tasks at the right width.

bioRxiv · Nov 3, 2017 · PreprintBioinformatics