Author

Amandine Labat

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:fungi (other)· 4 Assay:whole-genome sequencing· 4 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Alodie SnirciD· 4 shared Tatiana GiraudiD· 4 shared Elizabeth Chahine· 2 shared Fanny E. HartmanniD· 2 shared Jean‐Philippe VernadetiD· 2 shared Quentin RougemontiD· 2 shared Ricardo C. Rodŕıguez de la VegaiD· 2 shared Alice NamiasiD· 1 shared

Activity by Year

2021-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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4 shared papersEvolutionary Biology

Alodie SnircORCID

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Author profile →

5 papers

Recent·Most cited

A recent domestication event in Penicillium biforme, independent of the emblematic cheese mold P. camemberti

Samuel O’Donnell, Gabriela D Rezende, Jean‐Philippe Vernadet, Alodie Snirc, Amandine Labat, Monika Coton, Elisabeth Poirier, Baris Weber, Jörg‐Peter Schnitzler, Tatiana Giraud, Jeanne Ropars

The paper identifies a new Penicillium biforme lineage, cheesy, selected for food fermentation, with genetic and phenotypic differences from P. camemberti and traits advantageous for cheesemaking.

bioRxiv · Jul 30, 2026 · PreprintEvolutionary Biology

Stepwise recombination suppression around the mating-type locus associated with a diploid-like life cycle in Schizothecium fungi

Elsa De Filippo, Elizabeth Chahine, Jeanne Legendre--Despas, Alodie Snirc, Amandine Labat, Pauline Michel, Pierre Grognet, Valérie Gautier Christophe, Emilie Levert, Christophe Lalanne, Philippe Silar, Tatiana Giraud, Fanny E. Hartmann

The paper investigates recombination suppression around the mating-type locus in Schizothecium fungi, finding evolutionary strata associated with a diploid-like life cycle in pseudo-homothallic species.

Molecular Biology and Evolution · Dec 10, 2025Peer-reviewedEvolutionary Biology

Repeated loss of function at HD mating-type genes and of recombination suppression without mating-type locus linkage in anther-smut fungi

Elise A. Lucotte, Paul Jay, Quentin Rougemont, Loreleï Boyer, Amandine Cornille, Alodie Snirc, Amandine Labat, Elizabeth Chahine, Marine Duhamel, Alice Namias, Jacob Gendelman, Wen‐Juan Ma, Roxanne Kaaren Hayes, Shikhi Baruri, Joseph P. Ham, , Tatiana Giraud

The paper shows that HD mating-type genes have lost function in three Microbotryum species, with PR genes controlling mating compatibility, and reports evolutionary strata from recombination suppression.

Nature Communications · May 28, 2025Peer-reviewedEvolutionary Biology

An old inversion polymorphism involving giant mobile elements in an invasive fungal pathogen

Fanny E. Hartmann, Ricardo C. Rodŕıguez de la Vega, Arthur Demené, Thomas Badet, Jean‐Philippe Vernadet, Quentin Rougemont, Amandine Labat, Alodie Snirc, Lea Stauber, Daniel Croll, Simone Prospero, Cyril Dutech, Tatiana Giraud

The paper identifies a non-recombining genomic region in the invasive fungus Cryphonectria parasitica linked to the mating-type locus, showing balanced haplotype segregation and potential adaptation through mobile elements.

Molecular Biology and Evolution · Feb 1, 2025Peer-reviewedEvolutionary Biology

Marine gregarine genomes reveal the breadth of apicomplexan diversity and provide new insights on gliding motility

Julie Boisard, Evelyne Duvernois‐Berthet, Linda Duval, Joseph Schrével, Laure Guillou, Amandine Labat, Sophie Le Panse, Gérard Prensier, Loı̈c Ponger, Isabelle Florent

The paper characterizes the genome of Porospora gigantea, a marine gregarine, revealing its divergence from other apicomplexans and insights into gliding motility mechanisms.

bioRxiv · Aug 9, 2021 · PreprintGenomics