Author

Atefeh Fatemi

University of Cambridge

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:benchmark study· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:deconvolution· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:imaging· 1

Frequent Co-Authors

Alireza MolaeinezhadiD· 2 shared Claire M. MulveyiD· 2 shared Dario BressaniD· 2 shared Mohammad Al Sa’d· 2 shared Nicholas A. WaltoniD· 2 shared Abigail SheaiD· 1 shared Alejandra BrunaiD· 1 shared Ali Dariush· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Alireza MolaeinezhadORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Serval: A modular framework for decoding imaging based spatial transcriptomics data

Jenkin Tsui, Naila Adam, Woongcheol Choi, Luna Y Liu, C. Cárcamo Flores, Shadi Ansari, Esther Kong, Yukta Thapliyal, Hakwoo Lee, Shahid Haider, Issac Von Riedemann, Ciara H. O’Flanagan, Mohammad Al Sa’d, Bruno Albuquerque, Hamid Raza Ali, , Nicholas A. Walton

Serval is a modular framework for decoding spatial transcriptomics data that introduces Cosine, a method improving transcript recovery and correlation with expression references.

Bioinformatics · Sep 27, 2026Peer-reviewedBioinformatics

Robust Consensus Nuclear and Cell Segmentation

Melis O Irfan, Eduardo A. González-Solares, Tristan Whitmarsh, Alireza Molaeinezhad, Mohammad Al Sa’d, Claire M. Mulvey, Marta Pàez‐Ribes, Atefeh Fatemi, Dario Bressan, Nicholas A. Walton

This paper introduces a segmentation software wrapper that combines multiple existing methods to produce an optimized mask for cell segmentation.

Frontiers in Genetics · Jul 15, 2025Peer-reviewedBioinformatics