Author

Chenyu Li

Affiliated Hospital of Qingdao University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 3 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Organism:mouse· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Liwei Zhang· 2 shared Pin SuniD· 2 shared Qian Zhang· 2 shared Zhibin WangiD· 2 shared Celia Pilar Martinez‐JimeneziD· 1 shared Guozhang Tang· 1 shared Hanzhi WangiD· 1 shared Hong Zhou· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Liwei Zhang

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

scCircaSim: A Circadian Simulator for Single-Cell and Spatial Transcriptomics

Chenyu Li, Liwei Zhang, Qian Zhang, Liang Zhao, Xiaoxia Song, Yu Tian, Guozhang Tang, Hong Zhou, Zhibin Wang, Pin Sun

scCircaSim generates circadian single-cell and spatial transcriptomic data with known ground truth to evaluate analysis methods.

bioRxiv · Nov 6, 2026 · PreprintBioinformatics

Decoding Cell-level Circadian Phase and Rhythm-state Remodeling in Single-cell Transcriptomes With scRhythmBayes

Qian Zhang, Chenyu Li, Ioannis Konstantinos Deligiannis, Wenhong Jiao, Weigang Liu, Celia Pilar Martinez‐Jimenez, Zhibin Wang, Kenneth Allen Dyar, Liwei Zhang, Pin Sun

scRhythmBayes infers cell-level circadian phase and rhythm-state remodeling in single-cell transcriptomes, revealing distinct temporal patterns in liver zonation and heart disease.

bioRxiv · Oct 22, 2026 · PreprintBioinformatics

The recoverable resolution of cellular perturbation-response prediction

Yongqi Huang, Hanzhi Wang, Chenyu Li, Parker C. Wilson

This paper identifies context geometry compression in virtual cell models and shows that recoverable biological resolution, not measurement dimensionality, determines the accuracy of perturbation-response predictions.

bioRxiv · Oct 1, 2026 · PreprintBioinformatics

Pyruvate kinase activates SARM1 to exacerbate axonal degeneration in diabetic peripheral neuropathy

Jingxuan Liu, Wenxi Li, Chenyu Li, Yuefeng Jiang, Wenjie Zhu, Zhe Zhang, Yong Juan Zhao, Jinzhong Lin, Wei Yu

This study identifies PKM as a metabolic activator of SARM1 in diabetic neuropathy, showing that inhibiting their interaction reduces axonal degeneration.

bioRxiv · May 28, 2025 · PreprintNeuroscience