Author

David Yu

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:proteomics· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1

Frequent Co-Authors

Mark Stuart AndersoniD· 2 shared A J Green· 1 shared Aaron BodanskyiD· 1 shared Akshay Sharathchandra· 1 shared Alyssa Terry ReddyiD· 1 shared Andrew B. McKeoniD· 1 shared Axel You· 1 shared Bridget E.L. OstremiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersImmunology

Mark Stuart AndersonORCID

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Author profile →

3 papers

Recent·Most cited

A PATHOGENIC NFKB2 VARIANT CAUSES COMBINED IMMUNODEFICIENCY WITH THYMIC AND PERIPHERAL LYMPHOID DEFECTS IN RATS

Séverine Remy, Laurent Tesson, Claire Usal, Marie Massoda, Séverine Ménoret, Irina Proekt, David Yu, Axel You, Matthieu Giraud, Mark Stuart Anderson, Ignacio Anegón

This study characterizes a rat model with a NFKB2 mutation, revealing systemic immunodeficiency with thymic and peripheral lymphoid defects.

bioRxiv · Oct 8, 2026 · PreprintImmunology

AEGIS reveals epitope- and clone-resolved convergence of CNS B and T cell autoreactivity in ROHHAD

Aaron Bodansky, Vida Ahyong, Monica T. Dayao, James Asaki, ShiLu Vanasupa, Ravi Dandekar, Shini Chen, Joe Sabatino, Sam Klauer, Giselle M. Knudsen, Carlos Lizama Valenzuela, Krista Mccutcheon, Kelsey Zorn, Sukhman Sidhu, David Yu, , Joseph L. DeRisi

AEGIS identifies epitope- and clone-specific autoimmunity in ROHHAD by linking immune repertoires to self-epitopes, revealing convergence on ZSCAN1 epitopes in the CNS.

bioRxiv · May 11, 2026 · PreprintImmunology

GNAT family Pat2 lysine acetylation of glycerol kinase and its key role in glycerol metabolism in hypersaline-adapted archaea

Heather N. Judd, Karol M. Sanchez, Leah S. Dublino, Gabriel J. Zhang, David Yu, Daniel Gal, Ricardo L. Couto-Rodríguez, Xin Wang, Julie Anne Maupin-furlow

This study identifies HvPat2 as a GNAT family acetyltransferase that acetylates glycerol kinase to regulate glycerol metabolism in Haloferax volcanii.

mBio · Oct 27, 2025Peer-reviewedMicrobiology