Author

Defne Ceyhan

Nationwide Children's Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrei Rajkovic· 1 shared Andrew Jung· 1 shared Audrey E. Bollas· 1 shared Bo WangiD· 1 shared Cyrus L. TamiD· 1 shared Divya Koyyalagunta· 1 shared Elaine R. MardisiD· 1 shared Ilyes BaaliiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Andrei Rajkovic

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Author profile →

2 papers

Recent·Most cited

mRNABench: A curated benchmark for mature mRNA property and function prediction

Ruian Shi, Taykhoom Dalal, Philip Fradkin, Divya Koyyalagunta, Simran Chhabria, Andrew Jung, Cyrus L. Tam, Defne Ceyhan, Jessica Lin, Kaitlin U. Laverty, Ilyes Baali, Bo Wang, Quaid Morris

mRNABench evaluates self-supervised mRNA foundation models using 13 datasets and 81 tasks to assess their ability to predict mRNA properties.

bioRxiv · Jul 5, 2025 · PreprintGenomics

SNVstory: A dockerized algorithm for rapid and accurate inference of sub-continental ancestry

Audrey E. Bollas, Andrei Rajkovic, Defne Ceyhan, Jeffrey Gaither, Elaine R. Mardis, Peter White

SNVstory infers sub-continental ancestry using machine learning models and evaluates its accuracy against self-reported ethnicity and race in a clinical dataset.

bioRxiv · Jun 2, 2023 · PreprintGenomics