Author
University of Toronto
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
3 papers
Recent·Most cited
Philip Fradkin, Ruian Shi, Taykhoom Dalal…·Bo Wang
Orthrus is a Mamba-based RNA foundation model pre-trained with biological augmentations and contrastive learning, achieving better mRNA property prediction than existing models with less fine-tuning data.
Ruian Shi, Taykhoom Dalal, Philip Fradkin…·Quaid Morris
mRNABench evaluates self-supervised mRNA foundation models using 13 datasets and 81 tasks to assess their ability to predict mRNA properties.
Yulia Rubanova, Ruian Shi, Caitlin F Harrigan…·PCAWG network
TrackSig estimates mutation evolutionary trajectories from bulk tumor sequencing data, showing improved accuracy in detecting subclonal populations and signature activity changes compared to baseline methods.