Author

Jessica Lin

Czech Technical University in Prague

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:human· 1 Assay:long-read sequencing· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Andrew Jung· 1 shared Bo WangiD· 1 shared Cyrus L. TamiD· 1 shared Defne Ceyhan· 1 shared Divya Koyyalagunta· 1 shared Gina El NesriD· 1 shared Ilyes BaaliiD· 1 shared Irimpan I. MathewsiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

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10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Andrew Jung

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2 papers

Recent·Most cited

BioengineeringbioRxivPreprintSep 30, 2025

Isolation of structural constraints by ensemble-conditioned protein sequence design

Richard W. Shuai, Ling Zhou, Gina El Nesr…·Po‐Ssu Huang

This paper introduces Caliby, a sequence design method that conditions on structural ensembles to improve designability while reducing native sequence recovery.

6 citations

protein sequencedeep learning

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GenomicsbioRxivPreprintJul 5, 2025

mRNABench: A curated benchmark for mature mRNA property and function prediction

Ruian Shi, Taykhoom Dalal, Philip Fradkin…·Quaid Morris

mRNABench evaluates self-supervised mRNA foundation models using 13 datasets and 81 tasks to assess their ability to predict mRNA properties.

3 citations

humanlong-read sequencing

𝕏 PostBluesky