Author

Ding Ma

BC Cancer AgencyPrimary ORCID profile (0000-0001-8983-2310 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Ding MaiD1 paper · Tongji Hospital

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:software / tool· 2 Assay:whole-genome sequencing· 2 Approach:Bayesian inference· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:deconvolution· 1 Research Focus:development & morphogenesis· 1

Frequent Co-Authors

Branden J. LynchiD· 3 shared David D. HuntsmaniD· 3 shared Andrew J. L. RothiD· 2 shared Janine SenziD· 2 shared Sheila Nicholson· 2 shared Alexandre Bouchard‐CôtéiD· 1 shared Andreas von DeimlingiD· 1 shared Carlos Vasquez-RiosiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersCancer Biology

Branden J. LynchORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Minimally invasive monitoring of clonal evolution through integrated single cell and ctDNA analysis

Farhia Kabeer, Matteo Lepur, Branden J. Lynch, Emilia Hurtado, Elena Zaikova, Janine Senz, Vinci Au, Caroline Baril, Ding Ma, Sheila Nicholson, Gavin Ha, JESSICA N. MCALPINE, Samuel A. J. R. Aparicio, David D. Huntsman, Alexandre Bouchard‐Côté, , Andrew J. L. Roth

cfClone, a Bayesian model, deconvolves cfDNA whole-genome sequencing using scWGS-derived haplotype-specific clone copy-number profiles to estimate tumour fraction, clonal prevalence, and flag missed clones.

bioRxiv · Aug 19, 2026 · PreprintCancer Biology✦ In-depth digest

Utanos: A general-purpose shallow whole-genome sequencing analysis workflow identifies interpretable copy number signatures

J. Maxwell Douglas, Branden J. Lynch, Jacky Chun Hei Yiu, Sheila Nicholson, Carlos Vasquez-Rios, Ding Ma, David D. Huntsman, Yongjin Park

Utanos provides a modular workflow for analyzing shallow whole-genome sequencing data to detect copy number aberrations and signatures.

bioRxiv · Jul 27, 2026 · PreprintBioinformatics

Spatial single cell transcriptomic analysis of a novel DICER1 Syndrome GEMM informs the cellular origin and developmental hierarchy of associated sarcomas

Felix K. F. Kommoss, Joyce Yu Han Zhang, Branden J. Lynch, Shary Yuting Chen, Janine Senz, Yana Moscovitz, Lesley A. Hill, Ding Ma, R. Wilder Scott, Jonathan W. Bush, Kenneth Sung-Man Chen, Andrew J. L. Roth, Andreas von Deimling, William David Foulkes, Gregg B. Morin, , David D. Huntsman

This study uses a mouse model to identify a fibroblastic origin for DICER1 sarcomas and shows their potential to differentiate into rhabdomyoblastic or anaplastic sarcomas.

Nature Communications · Mar 30, 2026Peer-reviewedCancer Biology