Author

F. Beulig

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:E. coli· 2 Approach:machine learning (classical)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

B. O. Palsson· 2 shared L. Yang· 2 shared S. H. Kim· 2 shared A. Patel· 1 shared C. Rode· 1 shared C. Steffen· 1 shared D. C. Zielinski· 1 shared E. Oezdemir· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersMicrobiology

B. O. Palsson

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2 papers

Recent·Most cited

Trade-off Between Resistance and Persistence in High Cell Density Escherichia Coli Cultures

F. Beulig, J. Bafna-Ruehrer, P. E. Jensen, S. H. Kim, A. Patel, V. Kandasamy, C. Steffen, K. Decker, D. C. Zielinski, L. Yang, E. Oezdemir, S. Sudarsan, B. O. Palsson

The paper investigates high cell density physiology in Escherichia coli, revealing a trade-off between resistance and persistence through transcriptional analysis and machine learning.

bioRxiv · Jan 29, 2024 · PreprintMicrobiology

Data-Driven Strain Design Towards Mitigating Biomanufacturing Stresses

P. V. Phaneuf, S. H. Kim, K. Rychel, C. Rode, F. Beulig, B. O. Palsson, L. Yang

This paper identifies mutations improving stress tolerance in E. coli for melatonin production using a data-driven approach integrating adaptive evolution data and multi-omics analysis.

bioRxiv · Sep 17, 2023 · PreprintBioengineering