Author

F. Fuchs

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:protein structure prediction· 1 Assay:structural biology· 1 Approach:transformer / foundation model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. Damasio· 1 shared A. de Lajarte· 1 shared A. Kashi· 1 shared A. L. LaBella· 1 shared A. Rokas· 1 shared C. Kalicki· 1 shared C. L'Esperance-Kerckhoff· 1 shared C. Valero· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

A. Damasio

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2 papers

Recent·Most cited

Diverse Database and Machine Learning Model to narrow the generalization gap in RNA structure prediction

A. de Lajarte, Y. Martin des Taillades, C. Kalicki, F. Fuchs, J. Aruda, D. Salazar, M. Allan, C. L'Esperance-Kerckhoff, A. Kashi, F. Jossinet, S. Rouskin

The paper introduces a diverse RNA structure database and a deep learning model, eFold, which improves RNA secondary structure prediction by emphasizing structural diversity over database size.

bioRxiv · Jan 24, 2024Biochemistry

Genomic and phenotypic analysis of COVID-19-associated pulmonary aspergillosis isolates of Aspergillus fumigatus

J. L. Steenwyk, M. E. Mead, P. A. Castro, C. Valero, A. Damasio, R. A. C. Santos, A. L. LaBella, Y. Li, S. L. Knowles, H. A. Raja, N. H. Oberlies, X. Zhou, O. A. Cornely, F. Fuchs, P. Koehler, , A. Rokas

The paper analyzes the genomes and phenotypes of four Aspergillus fumigatus isolates from COVID-19 patients, finding minor genomic differences and variable virulence traits.

bioRxiv · Nov 6, 2020Microbiology