Author

J. Caius

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 6

Signature Assays, Organisms & Methods

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Organism:plant (other)· 5 Research Focus:chromatin & epigenetic regulation· 4 Approach:experimental assay· 4 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Assay:DNA methylation· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1

Frequent Co-Authors

V. Brunaud· 3 shared S. Citerne· 2 shared A. Andres-Robin· 1 shared A. Bewick· 1 shared A. Delaunay· 1 shared A. Grimault· 1 shared A. Harkess· 1 shared A. Pasha· 1 shared

Activity by Year

2019-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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3 shared papersPlant Biology

V. Brunaud

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Author profile →

6 papers

Recent·Most cited

A ppGpp-mediated brake on photosynthesis is required for acclimation to nitrogen limitation in Arabidopsis.

S. Romand, H. Abdelkefi, C. Lecampion, M. Belaroussi, M. Dusenne, B. Ksas, S. Citerne, J. Caius, S. D'Alessandro, H. Fakhfakh, S. Caffarri, M. Havaux, B. Field

This study shows that ppGpp is essential for Arabidopsis to acclimate to nitrogen limitation by remodeling photosynthesis and coordinating chloroplast-nuclear gene expression.

bioRxiv · Sep 18, 2021Plant Biology

A derived ZW chromosome system in Amborella trichopoda, the sister species to all other extant flowering plants

J. Kafer, A. Bewick, A. Andres-Robin, G. Lapetoule, A. Harkess, J. Caius, B. Fogliani, G. Gateble, P. Ralph, C. W. dePamphilis, F. Picard, C. P. Scutt, J. Leebens-Mack, G. A. Marais

The paper identifies a ZW sex chromosome system in Amborella trichopoda, revealing a 4 Mb sex-determining region on chromosome 9 with recent divergence.

bioRxiv · Dec 21, 2020Plant Biology

The genomic impact of mycoheterotrophy: targeted gene losses but extensive expression reprogramming.

M. Jakalski, J. Minasiewicz, J. Caius, M. May, M.-A. Selosse, E. Delannoy

This study compares transcriptomes of mycoheterotrophic orchids to autotrophic species, revealing gene losses in photosynthesis and expression reprogramming in metabolic pathways.

bioRxiv · Jun 26, 2020Plant Biology

Hypomethylated poplars show higher tolerance to water deficit and highlight a dual role for DNA methylation in shoot meristem: regulation of stress response and genome integrity

M. D. Sow, A.-L. Le Gac, R. Fichot, S. Lanciano, A. Delaunay, I. Le Jan, M.-C. Lesage-Descauses, S. Citerne, J. Caius, V. Brunaud, L. Soubigou-Taconnat, H. Cochard, V. Segura, C. Chaparro, C. Grunau, , S. Maury

This study shows hypomethylated poplars are more drought-tolerant and reveals DNA methylation's role in stress response and genome integrity in shoot meristems.

bioRxiv · Apr 16, 2020 · PreprintPlant Biology

Transcriptomics at maize embryo/endosperm interfaces identify a novel transcriptionally distinct endosperm sub-domain adjacent to the embryo scutellum (EAS)

N. M. Doll, J. Just, V. Brunaud, J. Caius, A. Grimault, N. Depege-Fargeix, E. Esteban, A. Pasha, N. J. Provart, G. C. Ingram, P. C. Rogowsky, T. Widiez

The paper identifies a novel endosperm sub-domain adjacent to the embryo scutellum in maize kernels through transcriptomic analysis of interface tissues.

bioRxiv · Oct 9, 2019Plant Biology

Low temperature triggers genome-wide hypermethylation of transposable elements and centromeres in maize

Z. ACHOUR, J. JOETS, M. LEGUILLOUX, H. SELLIER, J.-P. PICHON, M. LEVEUGLE, H. DUBORJAL, J. CAIUS, V. BRUNAUD, C. PAYSANT-LE ROUX, T. MARY-HUARD, C. GIAUFFRET, C. VITTE

The paper shows that cold stress in maize increases genome-wide DNA methylation of transposable elements and centromeres, with context-specific responses depending on TE types and chromosomal location.

bioRxiv · Mar 11, 2019 · PreprintPlant Biology