A. Pasha

A high-resolution gene expression atlas of the medial and lateral domains of the gynoecium of Arabidopsis

This study creates a high-resolution gene expression atlas of the medial and lateral domains of the Arabidopsis gynoecium using laser microdissection and RNA sequencing.

The transcriptome landscape of developing barley seeds reveals H3K27me3 dynamics in endosperm tissues

The aerial epidermis is a major site of quinolizidine alkaloid biosynthesis in narrow-leafed lupin

This study identifies the leaf epidermis as a major site of quinolizidine alkaloid biosynthesis in narrow-leafed lupin using mass spectrometry imaging and RNAseq.

A laser capture microdissection transcriptome of M. truncatula roots responding to rhizobia reveals spatiotemporal tissue expression patterns of genes involved in nodule signaling and organogenesis

The paper presents a transcriptome resource analyzing spatiotemporal gene expression in M. truncatula roots during rhizobial inoculation, revealing tissue-specific expression patterns and identifying genes involved in nodule signaling and organogenesis.

Chromosome-level genome assembly of Euphorbia peplus, a model system for plant latex, reveals that relative lack of Ty3 transposons contributed to its small genome size

This paper presents a chromosome-level genome assembly of Euphorbia peplus, identifies a gene cluster for ingenol mebutate biosynthesis, and explains its small genome size through restricted Ty3 transposon expansion.

Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses

This study creates a gene expression atlas of Marchantia polymorpha under seven abiotic stresses and their combinations, revealing divergent stress responses and regulatory principles.

Immune and malignant cell phenotypes of ovarian cancer are determined by distinct mutational processes

This study identifies distinct immune and malignant cell phenotypes in ovarian cancer linked to specific mutational processes and anatomic sites.

Generation of guard cell RNA-seq transcriptomes during progressive drought and recovery using an adapted INTACT protocol for Arabidopsis thaliana shoot tissue

The paper generates guard cell-specific RNA-seq transcriptomes during drought stress and recovery in Arabidopsis thaliana using an optimized INTACT protocol and compares them to bulk leaf transcriptomes.

Transcriptomics at maize embryo/endosperm interfaces identify a novel transcriptionally distinct endosperm sub-domain adjacent to the embryo scutellum (EAS)

The paper identifies a novel endosperm sub-domain adjacent to the embryo scutellum in maize kernels through transcriptomic analysis of interface tissues.

Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism and roots

The paper presents a gene expression atlas for Selaginella moellendorffii, revealing evolutionary insights into vascular traits, secondary metabolism, and root development.