Author

J. Scire

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 3 Approach:statistical model· 3 Research Focus:phylogenetics / evolution· 2 Organism:virus· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:host-pathogen & immune response· 1 Organism:multiple species· 1

Frequent Co-Authors

T. Stadler· 3 shared J. Barido-Sottani· 2 shared T. G. Vaughan· 2 shared A. Dan· 1 shared A. Pohlmann· 1 shared C. Guinat· 1 shared C. Staubach· 1 shared C. Valenzuela Agui· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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3 shared papersEvolutionary Biology

T. Stadler

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3 papers

Recent·Most cited

Robust phylodynamic analysis of genetic sequencing data from structured populations

J. Scire, J. Barido-Sottani, D. Kühnert, T. Vaughan, T. Stadler

The paper improves the bdmm algorithm in BEAST 2 to handle larger genetic datasets, enabling more precise phylodynamic analysis of structured populations.

bioRxiv · Jun 16, 2022Evolutionary Biology

Disentangling the role of poultry farms and wild birds in the spread of highly pathogenic avian influenza virus H5N8 in Europe

C. Guinat, C. Valenzuela Agui, T. G. Vaughan, J. Scire, A. Pohlmann, C. Staubach, J. King, E. Swieton, A. Dan, L. Cernikova, M. F. Ducatez, T. Stadler

This study uses phylodynamic analysis of H5N8 virus sequences to quantify transmission dynamics between poultry farms and wild birds in Europe during the 2016-17 epidemic and identifies key drivers of cross-border spread.

bioRxiv · Oct 22, 2021Ecology

Improved multi-type birth-death phylodynamic inference in BEAST 2

J. Scire, J. Barido-Sottani, D. Kuehnert, T. G. Vaughan, T. Stadler

The paper improves the multi-type birth-death model in BEAST 2 to handle larger datasets and reports results on Influenza A virus migration and seasonal dynamics.

bioRxiv · Jan 6, 2020 · PreprintEvolutionary Biology