Author

Jing Deng

Hong Kong Polytechnic University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Molecular Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

Jie ZhangiD· 2 shared Kang LiiD· 2 shared Shulan QiuiD· 2 shared Weixu Wang· 2 shared Abebe Edao NegessoiD· 1 shared Cunliang LiiD· 1 shared Feng‐Ming KongiD· 1 shared Haoning QiniD· 1 shared

Activity by Year

2026-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersMolecular Biology

Jie ZhangORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Plant-specific and conserved mechanisms of the polymerase-associated factor 1 complex in replication stress responses

Cunliang Li, Yuyu Guo, Ziying Wang, Haowei zheng, Jing Deng, Shunping Yan, Lili Wang

This study identifies plant-specific and conserved mechanisms by which the PAF1C complex regulates replication stress responses through WEE1-PAF1 interactions and RFC-dependent recruitment.

Nature Plants · Aug 24, 2026Peer-reviewedPlant Biology

Noncanonical Circular RNAs and Potential Functions

Kang Li, Weixu Wang, Abebe Edao Negesso, Jing Deng, Haoning Qin, Jiahao Jiang, Ke Ma, Jie Zhang, Ping Wei, Li Dj, Feng‐Ming Kong, William C. Cho, Shulan Qiu, Wei Zhang

This study identifies and validates noncanonical circRNAs in lung cancer, showing they are abundant, functional, and clinically relevant.

bioRxiv · Jul 23, 2026 · PreprintMolecular Biology

Integrated single-cell and spatial transcriptomic analysis of T cell exhaustion and immunometabolic remodeling in HPV-positive oropharyngeal squamous cell carcinoma

Ke Wang, Nian Hui Deng, Yueqin Tao, Xin Yang, Mujie Yuan, Longhua Gao, Shuai Jiang, Wei Shang, Jing Deng, Lin Wang

This study integrates single-cell and spatial transcriptomics to uncover mechanisms of immune checkpoint resistance in HPV-positive oropharyngeal cancer, identifying a KMT2D-KLF7-PD-L1 axis as a therapeutic target.

bioRxiv · Mar 14, 2026 · PreprintCancer Biology

Circular RNA identification using a genomic language model and a small number of authenticated examples

Kang Li, Weixu Wang, Jiaohao Jiang, Jing Deng, Jie Zhang, Shulan Qiu, Weixiong Zhang

The paper introduces circFormer, a genomic language model-driven method for circular RNA identification, which outperforms traditional approaches and validates a high percentage of its candidates.

bioRxiv · Mar 6, 2026 · PreprintBioinformatics