Author

Jonathan Chacko

The University of Texas at Austin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:Ribo-seq· 2 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1 Research Focus:protein design· 1

Frequent Co-Authors

Can CenikiD· 2 shared Hakan ÖzadamiD· 2 shared Dayea Park· 1 shared Dinghai ZhengiD· 1 shared Elif Sarinay CenikiD· 1 shared Ian HoskinsiD· 1 shared Jun Wang· 1 shared Kangsheng Qi· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

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2 papers

Recent·Most cited

Translation efficiency covariation across cell types is a conserved organizing principle of mammalian transcriptomes

Yue Liu, Shilpa J Rao, Ian Hoskins, Michael M. Geng, Qiuxia Zhao, Jonathan Chacko, Vighnesh Ghatpande, Kangsheng Qi, Logan Persyn, Jun Wang, Dinghai Zheng, Yochen Zhong, Dayea Park, Elif Sarinay Cenik, Vikram Agarwal, , Can Cenik

The paper analyzes ribosome profiling data to show translation efficiency covariation (TEC) is conserved across human and mouse cells, revealing gene functions not evident from RNA or protein co-expression.

Nature Biotechnology · Jul 25, 2025Peer-reviewedBioinformatics

RiboGraph: An interactive visualization system for ribosome profiling data at read length resolution

Jonathan Chacko, Hakan Özadam, Can Cenik

RiboGraph provides an interactive visualization tool for ribosome profiling data, enabling real-time analysis at read length resolution without preprocessing.

Bioinformatics · Jun 1, 2024Peer-reviewedBioinformatics