Author

Jude Kendall

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3 Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Joan Alexander· 2 shared Michael H. WigleriD· 2 shared Michael Wigler· 2 shared Peter A. Andrews· 2 shared Amritha Varshini Hanasoge SomasundaraiD· 1 shared Arvind RishiiD· 1 shared Camila O. dos SantosiD· 1 shared Chen CheniD· 1 shared

Activity by Year

2015-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersGenomics

Joan Alexander

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

DNA and RNA from the same single nucleus reveals interactions between genomic and transcriptomic landscapes in human tumor samples

Siran Li, Joan Alexander, Jude Kendall, Peter Andrews, Elizabeth Rose, Hope Orjuela, Sarah Park, Craig Podszus, Liam Shanley, Nissim Ranade, Patrick Morris, Danielle Stauder, Daniel Bradford, Michael Ronemus, Arvind Rishi, , Dan Levy

This study introduces hybrid BAG-seq to analyze DNA and RNA from single nuclei in tumor samples, revealing genome-transcriptome interactions and tumor heterogeneity.

bioRxiv · Oct 4, 2023 · PreprintGenomics

Parity-induced changes to mammary epithelial cells control NKT cell expansion and mammary oncogenesis

Amritha Varshini Hanasoge Somasundara, Matthew A. Moss, Mary J. Feigman, Chen Chen, Samantha L. Cyrill, Michael Francis Ciccone, Marygrace C. Trousdell, Macy Vollbrecht, Siran Li, Jude Kendall, Semir Beyaz, John Erby Wilkinson, Camila O. dos Santos

The paper shows pregnancy-induced changes in mammary epithelial cells lead to NKT cell expansion and promote mammary oncogenesis through CD1d expression.

Cell Reports · Dec 1, 2021Peer-reviewedDevelopmental Biology

G-Graph: An interactive genomic graph viewer

Peter A. Andrews, Joan Alexander, Jude Kendall, Michael H. Wigler

G-Graph is an interactive genomic scatter plot viewer designed for exploring numeric data and annotations across genomic positions, enabling researchers to analyze copy number profiles and identify deleterious variants.

bioRxiv · Nov 18, 2019 · PreprintGenomics

MUMdex: MUM-based structural variation detection

Peter A. Andrews, Ivan Iossifov, Jude Kendall, Steven Marks, Lakshmi Muthuswamy, Zihua Wang, Dan Levy, Michael Wigler

MUMdex detects structural variations by analyzing maximal unique matches, demonstrating accuracy in simulated and real human genome data.

bioRxiv · Sep 30, 2016 · PreprintGenomics

Interactive analysis and quality assessment of single-cell copy-number variations

Tyler Garvin, Robert Aboukhalil, Jude Kendall, Timour Baslan, Gurinder S Atwal, James Hicks, Michael Wigler, Michael Schatz

The paper introduces Ginkgo, a web platform for analyzing and assessing single-cell copy-number variations, and validates it by reproducing results from five studies.

Nature Methods · Sep 7, 2015Peer-reviewedBioinformatics