Author

Jun Gong

Sun Yat-sen UniversityPrimary ORCID profile (0009-0005-9819-1443 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Jun GongiD1 paper · Cedars-Sinai Medical Center

Biology Disciplines

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Microbiology· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:large language model· 1 Assay:metagenomics· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:protein design· 1

Frequent Co-Authors

Alexander DerryiD· 1 shared Alexander W. RivesiD· 1 shared Carolyn Kim· 1 shared Chetan Mishra· 1 shared Deniz OktayiD· 1 shared Eleni GentekakiiD· 1 shared Halil AkiniD· 1 shared Huiwen Deng· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperSynthetic Biology

Alexander DerryORCID

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2 papers

Recent·Most cited

Simulating 500 million years of evolution with a language model

Thomas Hayes, Roshan Rao, Halil Akin, Nicholas Sofroniew, Deniz Oktay, Zeming Lin, Robert Verkuil, Vincent Q. Tran, Jonathan Deaton, Marius Wiggert, Rohil Badkundri, Irhum Shafkat, Jun Gong, Alexander Derry, Raul S. Molina, , Alexander W. Rives

ESM3, a 98-billion-parameter multimodal protein language model tokenized across sequence, structure, and function, designs a bright green fluorescent protein at 58% sequence identity to known fluorescent proteins.

Science · Jan 16, 2025Peer-reviewedSynthetic Biology✦ In-depth digest

Coupling between ribotypic and phenotypic traits of protists across life-cycle stages and temperatures

Songbao Zou, Rao Fu, Huiwen Deng, Qianqian Zhang, Eleni Gentekaki, Jun Gong

The paper examines relationships between ribotypic and phenotypic traits in protists across life-cycle stages and temperatures, finding allometric relationships and proposing a framework to estimate resting cysts.

Microbiology Spectrum · Nov 24, 2021Peer-reviewedMicrobiology