Author

Limei Han

Fudan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:mouse· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Yifeng JiaoiD· 2 shared Yuan QiiD· 2 shared Baole Wen· 1 shared Chengming ZhangiD· 1 shared Chengyu LiiD· 1 shared Cirong LiuiD· 1 shared Jiang CheniD· 1 shared Jianyun Ma· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Yifeng JiaoORCID

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2 papers

Recent·Most cited

SCRIPT: Predicting Single-cell Long-range Cis-regulation Based on Pretrained Graph Attention Networks

Yu Zhang, Baole Wen, Yifeng Jiao, Yuchen Liu, Xin Guo, Yushuai Wu, Jiyang Li, Limei Han, Yinghui Xu, Xin Gao, Yuan Qi, Yuan Hang Cheng, Ying He, Weidong Tian

SCRIPT predicts single-cell cis-regulatory relationships using graph attention networks, achieving high accuracy and improving long-range prediction.

Advanced Science · Aug 20, 2025Peer-reviewedBioinformatics

BrainBeacon: A Cross-Species Foundation Model for Single-cell Resolved Brain Spatial Transcriptomics

Chengming Zhang, Yiwen Yang, Yifeng Jiao, Qianqian Yang, Xin Guo, Jing Xu, Jiyang Li, Yuanyuan Zhou, Zhen Liu, Yushuai Wu, Yu Zhang, Jiang Chen, Jianyun Ma, Yuxuan Liu, Yao Zhang, , Wu Wei

BrainBeacon is a cross-species foundation model for whole-brain spatial transcriptomics that enables cross-species alignment and uncovers spatial regulatory mechanisms of aging.

bioRxiv · Jul 8, 2025 · PreprintBioinformatics