Author

Ling-ling Chen

Shanghai Jiao Tong UniversityPrimary ORCID profile (0000-0002-2842-0803 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Ling-Ling CheniD1 paper · Center for Excellence in Molecular Cell Science

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1 Approach:transformer / foundation model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Bilian Qian· 1 shared Chao Liu· 1 shared Chao Qin· 1 shared Chengwei LiangiD· 1 shared Chunling Zhang· 1 shared Chunyan XuiD· 1 shared Dongxu Li· 1 shared Duoyuan CheniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Bilian Qian

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2 papers

Recent·Most cited

Chimeric archaeal BHB-human pre-tRNA scaffold HARBOR system enables versatile production of functional circular RNA modalities

Shi-Meng Cao, Xin Feng, J.Tian-Chang Zhang, Hao Wu, Xiao Wang, Keqiong Ye, Ling-Ling Chen

The paper introduces the HARBOR system for producing functional circular RNAs with high efficiency and versatility in both cells and vivo.

bioRxiv · Oct 13, 2026 · PreprintMolecular Biology

OneGenome-Rice (OGR): A genomic foundation model for rice

Bilian Qian, Chengwei Liang, Chao Qin, Chao Liu, Chunling Zhang, Chunyan Xu, Dongxu Li, Guirong Xue, Hang He, He Zhang, Huiying He, Duoyuan Chen, Jiwei Xu, Junyang Zhang, Jian Sun, , Ziqing Deng

OneGenome-Rice (OGR) is a genomic foundation model for rice pre-trained on 422 genomes, outperforming existing models in 11 tasks and enabling downstream applications like trait analysis and gene expression prediction.

bioRxiv · May 29, 2026 · PreprintGenomics