Author

Lingqi Yu

Women's Hospital, School of Medicine, Zhejiang University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Haihong Yang· 2 shared Jie LiaoiD· 2 shared Jingyang QianiD· 2 shared Xiaohui FaniD· 2 shared Xin ShaoiD· 2 shared Chengyu LiiD· 1 shared Dan WuiD· 1 shared Fang YiniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersBioinformatics

Haihong Yang

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2 papers

Recent·Most cited

Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data with miRTalk

Xin Shao, Lingqi Yu, Chengyu Li, Jingyang Qian, Xinyu Yang, Haihong Yang, Jie Liao, Xueru Fan, Xiao Xu, Xiaohui Fan

miRTalk infers EV-derived miRNA-mediated cell-cell communication from scRNA-seq data, showing high accuracy in simulated and real datasets.

Genome biology · Apr 14, 2025Peer-reviewedBioinformatics

De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution

Jie Liao, Jingyang Qian, Fang Yin, Zhuo Chen, Xiang Zhuang, Ningyu Zhang, Xin Shao, Yining Hu, Penghui Yang, Junyun Cheng, Yang Hu, Lingqi Yu, Haihong Yang, Jinlu Zhang, Xiaoyan Lu, , Xiaohui Fan

Bulk2Space deconvolves bulk RNA-seq data to reveal spatial and cellular heterogeneity using single-cell and spatial transcriptomics references, identifying immune cell spatial variance and novel gene patterns in mouse brain regions.

Nature Communications · Oct 30, 2022Peer-reviewedBioinformatics