TEDDY: An integrative workflow for TE-chimeric isoform reconstruction and systematic characterization of TE-dependent transcriptional regulation
Yihan Xiao, Lu Shen, Cizhong Jiang, Yanping Zhang, Yuwei Liang, Jiqing Yin, Hong Wang, Jiejun Shi, Rongrong Le, Shaorong Gao
TEDDY reconstructs and characterizes TE-dependent isoforms across biological contexts, revealing regulatory networks and identifying novel regulators like Arid3a with clinical relevance in cancer.
bioRxiv · Aug 26, 2026 · PreprintGenomics