Author

Peter Carbonetto

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Adnan AlaziziiD· 1 shared Chris Fuller· 1 shared Francesca LucaiD· 1 shared Gabrielle Garlicki· 1 shared Hao LiiD· 1 shared Jialiang Gu· 1 shared Jiashun ZhengiD· 1 shared Kaitlyn Hutchins· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Adnan AlaziziORCID

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2 papers

Recent·Most cited

Lifestyle-mediated shifts in the gut microbiome and host genetics modulate gene expression in intestinal organoids

Shreya Nirmalan, Sabrina Arif, Gabrielle Garlicki, Adnan Alazizi, Kaitlyn Hutchins, Mathilde Poyet, Mathieu Groussin, Peter Carbonetto, Roger Pique-Regi, Ran Blekhman, Francesca Luca

The paper investigates how lifestyle-associated microbiome shifts and host genetics influence gene expression in intestinal organoids, identifying microbiome-dependent allele-specific expression effects.

bioRxiv · Nov 10, 2026 · PreprintGenomics

Identifying the genetic basis and molecular mechanismsunderlying phenotypic correlation between complex humantraits using a gene-based approach

Jialiang Gu, Chris Fuller, Peter Carbonetto, Xin He, Jiashun Zheng, Hao Li

This paper develops a gene-based approach to identify genetic overlaps and shared molecular mechanisms between complex human traits, revealing novel associations and pathways.

bioRxiv · Feb 9, 2021 · PreprintGenetics