Author

Peter Xie

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Biophysics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:software / tool· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Caroline BridgeiD· 3 shared Colin M. DieshiD· 3 shared Garrett StevensiD· 3 shared Ian H HolmesiD· 3 shared Lincoln David SteiniD· 3 shared Robert BuelsiD· 3 shared Scott CainiD· 3 shared Angel LeungiD· 2 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBioinformatics

Caroline BridgeORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Apollo 3: Multi-Species Genome Curation

Garrett Stevens, Kyösti Sutinen, Dario Beraldi, Shashank Budhanuru Ramaraju, Colin M. Diesh, William A. Haese-Hill, Peter Xie, Caroline Bridge, Adrien Morison, Angel Leung, Ulrike Böhme, Scott Cain, Nathan Dunn, Toby Hunt, Jane E. Loveland, , Ian H Holmes

Apollo 3 is a new manual genome annotation tool that integrates with JBrowse 2, enabling multi-genome editing and synteny visualization.

bioRxiv · Sep 10, 2026 · PreprintGenomics

T Cells Tear Apart Confining Extracellular Matrix Via a Breaststroke-like Motion to Generate Migration Paths

Byung Hang Ha, Peter Xie, Benjamin Johns, Cole Allan, Maria Moozhiyil Korah, Daniel Delitto, Paul L. Bollyky, Natalie Julia Torok, Ovijit Chaudhuri

This study shows T cells generate migration paths in confining ECMs by tearing them apart with breaststroke-like motion, finding that shear strength, not stiffness or pore size, correlates with migration.

bioRxiv · Oct 3, 2025 · PreprintBiophysics

JBrowse 2: A modular genome browser with views of synteny and structural variation

Colin M. Diesh, Garrett Stevens, Peter Xie, Teresa De Jesus Martinez, Elliot A. Hershberg, Angel Leung, Emma Guo, Shihab Dider, Junjun Zhang, Caroline Bridge, Gregory F J Hogue, Andrew Duncan, Matthew Morgan, Tia Flores, Benjamin N. Bimber, , Ian H Holmes

JBrowse 2 is a genome browser with enhanced views for structural variation and synteny, offering modular design and multiple usage options.

Genome biology · Apr 17, 2023Peer-reviewedBioinformatics

JBrowse Jupyter: A Python interface to JBrowse 2

Teresa De Jesus Martinez, Elliot A. Hershberg, Emma Guo, Garrett Stevens, Colin M. Diesh, Peter Xie, Caroline Bridge, Scott Cain, Robin Haw, Robert Buels, Lincoln David Stein, Ian H Holmes

JBrowse Jupyter provides a Python interface to JBrowse 2 for interactive genomic visualization within Jupyter notebooks.

Bioinformatics · Jan 1, 2023Peer-reviewedBioinformatics