Author

Rui Cheng

Huazhong Agricultural University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1 Organism:human· 1

Frequent Co-Authors

Chaoyong James YangiD· 2 shared Jia Tao SongiD· 2 shared Chenze Lu· 1 shared Di SuniD· 1 shared Fabai WuiD· 1 shared Huasen WangiD· 1 shared Jiao CaoiD· 1 shared Jieni Wang· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersBioinformatics

Chaoyong James YangORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A global atlas of deep-sea cold seep viruses uncovers extensive genomic novelty and biotechnological potential

Xinyue Liu, Xiaomei Guo, Lan Xue, Zijian Lu, Jieni Wang, Jing Liao, Lu Liu, Yanbin Chen, Yongyi Peng, Yingchun Han, Fabai Wu, Rui Cheng, Xiyang Dong

The paper constructs a global virome atlas of cold seep ecosystems, revealing novel viral diversity and biotechnological potential.

bioRxiv · Jun 21, 2026 · PreprintMicrobiology

PlantRing: A high-throughput wearable sensor system for decoding plant growth, water relations and innovating irrigation

Ting Sun, Chenze Lu, Zheng Shi, Mei Zou, Peng Bi, Xiaodong Xu, Qiguang Xie, Rujia Jiang, Yunxiu Liu, Rui Cheng, Wenbo Xu, Huasen Wang, Yingying Zhang, Pei Xu

PlantRing is a high-throughput wearable sensor system that monitors plant growth and water status, revealing novel hydraulic mechanisms and enabling precision irrigation.

Plant Communications · Mar 26, 2025Peer-reviewedPlant Biology

mitoSplitter: A mitochondrial variants-based method for efficient demultiplexing of pooled single-cell RNA-seq

Xinrui Lin, Yingwen Chen, Li Lin, Kun Yin, Rui Cheng, Xin Lin, Xiaoyu Wang, Ye Guo, Zhaorun Wu, Yingkun Zhang, Jin Li, Chaoyong James Yang, Jia Tao Song

mitoSplitter uses mitochondrial RNA variants to demultiplex pooled single-cell RNA-seq data, enabling efficient analysis of multiple samples without batch effects.

Proceedings of the National Academy of Sciences · Sep 19, 2023Peer-reviewedBioinformatics

Dendrimeric DNA Coordinate Barcoding Design for Spatial RNA Sequencing

Jiao Cao, Zhong Zheng, Di Sun, Xin Chen, Rui Cheng, Tianpeng Lv, Yu An, Junhua Zheng, Jia Tao Song, Lingling Wu, Chaoyong James Yang

Decoder-seq is a spatial RNA sequencing method that provides high-resolution, cost-effective, and sensitive spatial transcriptomic analysis, revealing detailed spatial gene expression patterns in mouse hippocampus and renal cancer.

bioRxiv · Jun 26, 2023 · PreprintGenomics