Author

Rui He

Jilin University

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Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:mouse· 1 Assay:protein structure· 1 Research Focus:software / tool· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Bingding HuangiD· 1 shared David A. ScheibliniD· 1 shared David A. WinkiD· 1 shared Fang Liu· 1 shared Feijuan Huang· 1 shared George ZakiiD· 1 shared Janelle CortneriD· 1 shared Lisa A. RidnouriD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Bingding HuangORCID

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2 papers

Recent·Most cited

SPAC: a scalable, integrated enterprise platform for end-to-end single cell spatial analysis of multiplexed tissue imaging

Fang Liu, Rui He, Thomas Sheeley, David A. Scheiblin, Stephen Lockett, Lisa A. Ridnour, David A. Wink, Mark Jensen, Janelle Cortner, George Zaki

SPAC provides a scalable platform for end-to-end single-cell spatial analysis of multiplexed tissue imaging data, enabling efficient processing and visualization of large datasets.

bioRxiv · Apr 2, 2025 · PreprintBioinformatics

A benchmark study of protein folding algorithms on nanobodies

Shibo Liang, Ziquan Liang, Zecheng Wu, Feijuan Huang, Xu Wang, Zihao Tan, Rui He, Zeyi Lu, Yuanzhe Cai, Bingding Huang, Xin Wang

The paper benchmarks five deep-learning-based protein folding algorithms on nanobody sequences to compare their accuracy against experimental structures.

International Conference on Communications, Computing and Artificial Intelligence (CCCAI) · Jun 1, 2023Peer-reviewedBioinformatics