Author

S. Venkatesh

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

S. C. Lee· 2 shared T. P. Quinn· 2 shared A. Beykikhoshk· 1 shared A. Elmore· 1 shared A. Quinn· 1 shared E. Martens· 1 shared G. Vasconcelos Pereira· 1 shared M. H. Foley· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBiophysics

S. C. Lee

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Multiple TonB Homologs are Important for Carbohydrate Utilization by Bacteroides thetaiotaomicron

R. M. Pollet, M. H. Foley, S. S. Kumar, A. Elmore, N. T. Jabara, S. Venkatesh, G. Vasconcelos Pereira, E. Martens, N. M. Koropatkin

This study identifies TonB4 and TonB6 as functionally redundant in polysaccharide uptake by Bacteroides thetaiotaomicron, with TonB4 being conserved across Bacteroides species.

bioRxiv · Jul 7, 2023 · PreprintMicrobiology

DeepTRIAGE: Interpretable and Individualised BiomarkerScores using Attention Mechanism for the Classification of Breast Cancer Sub-types

A. Beykikhoshk, T. P. Quinn, S. C. Lee, T. Tran, S. Venkatesh

DeepTRIAGE classifies breast cancer sub-types and assigns individualised biomarker scores using an attention mechanism, revealing heterogeneity within luminal sub-types.

bioRxiv · Mar 24, 2019Biophysics

A cross-cancer metastasis signature in the microRNA-mRNA axis of paired tissue samples

S. C. Lee, A. Quinn, T. Nguyen, S. Venkatesh, T. P. Quinn

The paper identifies cross-cancer metastasis biomarkers by analyzing miRNA-mRNA expression in paired tumor samples across 11 cancer types.

bioRxiv · Dec 2, 2018Cancer Biology