Author

Sandra L Daigle

Jackson Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scATAC-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Anuj SrivastavaiD· 1 shared Ashley Olson· 1 shared Brian S. WhiteiD· 1 shared Candice N. BakeriD· 1 shared Carol J. BultiD· 1 shared Catrina A. SpruceiD· 1 shared Christopher L. BakeriD· 1 shared Daniel A. SkellyiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMolecular Biology

Anuj SrivastavaORCID

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2 papers

Recent·Most cited

Enhlink infers distal and context-specific enhancer-promoter linkages

Olivier Poirion, Wulin Zuo, Catrina A. Spruce, Candice N. Baker, Sandra L Daigle, Ashley Olson, Daniel A. Skelly, Elissa J. Chesler, Christopher L. Baker, Brian S. White

Enhlink infers enhancer-promoter linkages using scATAC-seq data and outperforms existing methods, revealing a super-enhancer regulating striatal neuron markers.

Genome biology · Sep 2, 2024Peer-reviewedBioinformatics

RNA Immunoprecipitation and Sequencing of Isolated RNAs (RIP-SIR) Identifies Endogenous miRNA-Target Interactions

Julie M. Wells, Anuj Srivastava, Richard S. Maser, Rupesh K. Kesharwani, Vishal Sarsani, Sandra L Daigle, Ryan P. Lynch, Heidi J. Munger, Rosalinda A. Doty, Ruth L. Saxl, Carol J. Bult

The paper introduces RIP-SIR, a method to identify endogenous miRNA-target interactions across tissues and cell types.

bioRxiv · Aug 22, 2022 · PreprintMolecular Biology