Author

Saumya Gupta

Northeastern University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ayan PauliD· 2 shared Aabida SaferaliiD· 1 shared Alain LaederachiD· 1 shared Anastacia Wienecke· 1 shared Claire FleurissoniD· 1 shared Congjian Liu· 1 shared David Geller-McGrath· 1 shared George Stephen StephensoniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMolecular Biology

Ayan PaulORCID

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Author profile →

2 papers

Recent·Most cited

Large-scale structural analysis of pre-mRNA structure using RADIS

Claire Fleurisson, Sijin Chen, Ryan M MacDonald, George Stephen Stephenson, Hao Wu, Anastacia Wienecke, Saumya Gupta, Peter J. Castaldi, Ayan Paul, Kevin M. Weeks, Alain Laederach

RADIS enables comprehensive pre-mRNA structural analysis across intronic and intergenic regions, revealing structural patterns and relationships with splice-site strength and variant effects.

bioRxiv · Sep 13, 2026 · PreprintMolecular Biology

Improving splice site usage prediction with SPLAIRE

Matthew Runyan, Saumya Gupta, Yul Leshaem, David Geller-McGrath, Congjian Liu, Aabida Saferali, Jennifer Dy, Predrag Radivojac A, Yohannes Tesfaigzi, P J Castaldi, Ayan Paul

The paper evaluates splicing models, identifies performance gaps, and introduces a cell-type-specific model for improved splice site prediction in human airway epithelial cells.

bioRxiv · Jun 11, 2026 · PreprintGenomics