Author

Congjian Liu

Brigham and Women's Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aabida SaferaliiD· 2 shared Yohannes TesfaigziiD· 2 shared Andrea S Vendrame· 1 shared Ayan PauliD· 1 shared David Geller-McGrath· 1 shared Jennifer DyiD· 1 shared Jose Santos CabreraiD· 1 shared Kamakshi BankotiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Aabida SaferaliORCID

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2 papers

Recent·Most cited

A framework for designing splice-junction experiments in deep 3' single-cell RNA sequencing

Aabida Saferali, Congjian Liu, Andrea S Vendrame, Kamakshi Bankoti, Jose Santos Cabrera, Yohannes Tesfaigzi, Peter Castaldi

The paper establishes a framework for designing splicing experiments in deep 3'-biased single-cell RNA sequencing by analyzing depth requirements and benchmarking against bulk RNA sequencing.

bioRxiv · Sep 28, 2026 · PreprintBioinformatics

Improving splice site usage prediction with SPLAIRE

Matthew Runyan, Saumya Gupta, Yul Leshaem, David Geller-McGrath, Congjian Liu, Aabida Saferali, Jennifer Dy, Predrag Radivojac A, Yohannes Tesfaigzi, P J Castaldi, Ayan Paul

The paper evaluates splicing models, identifies performance gaps, and introduces a cell-type-specific model for improved splice site prediction in human airway epithelial cells.

bioRxiv · Jun 11, 2026 · PreprintGenomics