Author

Shuo Yan

Chinese Academy of Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioengineering· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Chengbin Hu· 1 shared Dawn BannermaniD· 1 shared Dhana AbdoiD· 1 shared Dongyue YuiD· 1 shared Ian M. FernandesiD· 1 shared Jiayi LiiD· 1 shared Jinghua SuniD· 1 shared Karl T. WagneriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Chengbin Hu

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Epicardial extracellular vesicles modulate gene expression following ischemia-reperfusion injury in heart-on-a-chip

Karl T. Wagner, Dawn Bannerman, Qinghua Wu, Simon Pascual‐Gil, Ian M. Fernandes, Luis Felipe Jiménez Vargas, Shuo Yan, Ramak Khosravi, Sargol Okhovatian, Dhana Abdo, Milica Radisic

The paper investigates how epicardial extracellular vesicles affect gene expression during ischemia-reperfusion injury using a heart-on-a-chip model.

Materials Today Bio · May 15, 2026Peer-reviewedBioengineering

Pathway-enhanced Transformer-based robust model for quantifying cell types of origin of cell-free transcriptome

Shuo Yan, Xuetao Tian, Yulong Qin, Jiayi Li, Tingyu Yang, Dongyue Yu, Wentao Liu, Jinghua Sun, Chengbin Hu, Qing Zhou, Zhongzhen Liu, Wenjing Wang

Deconformer improves cell type deconvolution of cell-free RNA by integrating biological pathways, showing better performance and interpretability across multiple datasets.

bioRxiv · Feb 28, 2024 · PreprintBioinformatics