Author

Sidhant Rohatgi

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Erika L. CyphertiD· 2 shared Aditi Dubey· 1 shared Angie L. Morales· 1 shared Ankur K. SinghiD· 1 shared Avani Tantry· 1 shared Charles LangelieriD· 1 shared Chongshan LiuiD· 1 shared Christopher J. HernandeziD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

Erika L. CyphertORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Exploratory multi-omics analysis reveals sex-specific differences in microbial response to antibiotic exposure

Avani Tantry, Weimiao Long, Julielam Tran, Sidhant Rohatgi, Erika L. Cyphert

This study investigates sex-specific differences in microbial, metabolic, and immune responses to antibiotic exposure using a multi-omics approach in mice.

bioRxiv · Sep 1, 2026 · PreprintMicrobiology

Commensal taxa in gut microbiota limit antibiotic resistance during extended oral antibiotic use

Erika L. Cyphert, Chongshan Liu, Victoria T. Chu, Aditi Dubey, Minying Liu, Zhe Zhong, James R. Cockey, Eva C. González Díaz, Angie L. Morales, Jacob C. Nixon, Matthew Garcia, Susana Zeng, Sidhant Rohatgi, Joan Wong, Ritwicq Arjyal, , Christopher J. Hernandez

The paper tracks antibiotic resistance gene (ARG) dynamics in mice during long-term antibiotic treatment, finding that commensal bacteria reduce ARG burden by outcompeting resistant taxa.

bioRxiv · Aug 13, 2025 · PreprintMicrobiology