Author

Sofia Angel

Johns Hopkins University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Aleksey V. ZiminiD· 1 shared Arlene Ruiz de LuzuriagaiD· 1 shared Christine Guo LianiD· 1 shared Daniel Olson· 1 shared Guihong WaniD· 1 shared Hannah Kozan· 1 shared Jennifer Lynn AndersoniD· 1 shared Kun‐Hsing YuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenetics

Aleksey V. ZiminORCID

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2 papers

Recent·Most cited

RECON infers regions of interest from H&E images and reconstructs whole-slide molecular profiles at single-cell resolution

Xinxing Yang, Ninghui Hao, Running Zhao, Sofia Angel, Yusheng Tan, Christine Guo Lian, Li Zhou, Daniel Olson, Kun‐Hsing Yu, Arlene Ruiz de Luzuriaga, Guihong Wan

RECON selects regions of interest from H&E images and reconstructs molecular profiles across entire slides at single-cell resolution for both transcriptomics and proteomics.

bioRxiv · Sep 1, 2026 · PreprintBioinformatics

WheresWalker: a pipeline for rapid mutation mapping using whole genome sequencing

McKenna Feltes, Aleksey V. Zimin, Sofia Angel, Nainika Pansari, Monica R. Hensley, Jennifer Lynn Anderson, Meng‐Chieh Shen, Mackenzie L. Klemek, Yijun Shen, Vighnesh S. Ginde, Vivian P. Truong, Hannah Kozan, Nhan V. Le, Meredith H. Wilson, Steven L. Salzberg, Steven Arthur Farber

WheresWalker is a mutation mapping pipeline that rapidly identifies mutation-containing intervals in whole genome sequencing data, validated in zebrafish and maize.

bioRxiv · Aug 14, 2024 · PreprintGenetics