Author

Souvik Ghosh

SUNY Upstate Medical University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:large language model· 1 Assay:metabolomics· 1 Organism:mouse· 1 Assay:proteomics· 1

Frequent Co-Authors

Alexander Kirschner· 1 shared Alison E. PattesoniD· 1 shared Ana Nicolle StratiD· 1 shared Arka Dutta· 1 shared Arunkumar Venkatesan· 1 shared Ashiqur KhudaBukhshiD· 1 shared Audrey M. BernsteiniD· 1 shared Hirak SarkariD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperNeuroscience

Alexander Kirschner

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

SPaRTA: Spatial Reasoning in Text-to-SQL for Omics Analysis

Arka Dutta, Souvik Ghosh, Kenneth Prado, Ashiqur KhudaBukhsh, Hirak Sarkar

SPaRTA enables non-experts to query spatial-omics data via natural language, achieving 63-77% accuracy with fine-tuning on cancer tissue datasets.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Compression injury regulates astrocyte morphology, metabolic function, and extracellular matrix modification in a 3D hydrogel

Ana Nicolle Strat, Suhani Patel, Minh‐Tri Ho Thanh, Alexander Kirschner, Souvik Ghosh, Michael P. Geiss, Arunkumar Venkatesan, Audrey M. Bernstein, Mariano Sebastian Viapiano, Yutao Liu, Alison E. Patteson, Samuel Herberg, Preethi S. Ganapathy

This study investigates how compressive strain affects astrocyte morphology, metabolism, and ECM modification in a 3D hydrogel model of the optic nerve head.

bioRxiv · Jun 20, 2025 · PreprintNeuroscience