Author

Timothy Miller

Tufts University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:protein structure· 1 Assay:proteomics· 1

Frequent Co-Authors

A Nazli Basak· 1 shared Adriano Chio· 1 shared Ahmad Al KhleifatiD· 1 shared Albert Ludolph· 1 shared Alfredo IacoangeliiD· 1 shared Ammar Al‐ChalabiiD· 1 shared Antonia RattiiD· 1 shared Christopher E. ShawiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperNeuroscience

A Nazli Basak

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2 papers

Recent·Most cited

Batch Effect Correction to Enhance Utility of a Publicly Available ALS Proteomics Dataset

Grace Cooper, Inez Oh, Philip Payne, Zachary B. Abrams, Timothy Miller

The paper corrects batch effects in the Answer ALS proteomics dataset using BDCs and ComBat, improving data utility while preserving biological variability.

bioRxiv · Nov 1, 2026 · PreprintBioinformatics

Molecular dynamics analysis of Superoxide Dismutase 1 mutations suggests decoupling between mechanisms underlying ALS onset and progression

Munishikha Kalia, Mattia Miotto, Deborah Ness, Sarah Opie-Martin, Thomas P Spargo, Lorenzo Di Rienzo, Tommaso Biagini, Francesco Petrizzelli, Ahmad Al Khleifat, Renata Kabiljo, Simon Topp, Keith Mayl, Isabella Fogh, Puja R. Mehta, Kelly L. Williams, , Alfredo Iacoangeli

This study uses molecular dynamics and clinical data to show structural and dynamic differences between WTL and MBR SOD1 variants, linking these to distinct ALS clinical outcomes.

Computational and Structural Biotechnology Journal · Jan 1, 2023Peer-reviewedNeuroscience