Author

Ting Chen

Tsinghua University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 2 Molecular Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:differential expression· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Assay:metagenomics· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Congmin ZhuiD· 2 shared Haimeng LiiD· 2 shared Yuqing YangiD· 2 shared Alan ShiiD· 1 shared Alexandre DupreyiD· 1 shared Bohui Zhou· 1 shared Fangcong YuiD· 1 shared Feng Xu· 1 shared

Activity by Year

2023-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

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2 shared papersMicrobiology

Congmin ZhuORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

A Deep Learning Framework for Predicting Gut Microbe-Host Receptor Interactions

Haimeng Li, Rui Zhao, Congmin Zhu, Rui Jiang, Ting Chen, Xiangyu Li, Yuqing Yang

HMI-Pred predicts gut microbe-host receptor interactions using deep learning, achieving high F1-scores and validating 47% of predictions through literature.

bioRxiv · Mar 23, 2026 · PreprintMicrobiology

Metabolic dysfunction related to specific genetic variant sites of methylmalonic acidemia

Haijuan Zhi, Yuxin Deng, Yi Ding, Ting Chen, Bohui Zhou, Yue Cao, Siyu Chang, Xia Zhan, Feng Xu, Lili Hao, Lili Liang, Wenjuan Qiu, Huiwen Zhang, Xuefan Gu, Lianshu Han

The paper investigates metabolic differences in methylmalonic acidemia subtypes caused by specific genetic variants, identifying enriched metabolites associated with each mutation.

bioRxiv · Dec 17, 2025 · PreprintMolecular Biology

Large-language-model-based antibiotic resistance gene prediction and resistomes mining in cyanobacterial blooms

Haimeng Li, Miao Qi, Xin Wang, Honglei Liu, Qiuying Yang, Hui Chen, Rui Jiang, Ting Chen, Yuqing Yang, Congmin Zhu

ESMARG, a large-language-model-based tool, improves antibiotic resistance gene detection in metagenomes and reveals seasonal dynamics and ecological factors in cyanobacterial blooms.

bioRxiv · Sep 3, 2025 · PreprintBioinformatics

CSLAN: Cross-Species Latent Alignment Network for Trauma-Related Cell-Type Classification

Rui Wu, Alan Shi, Yushi Liu, Alexandre Duprey, Ting Chen, Rui Li, Shuang Cao

CSLAN transfers mouse cell type knowledge to human trauma-related scRNA-seq data, achieving 96.67% accuracy in immune cell classification.

bioRxiv · Jun 9, 2025 · PreprintBioinformatics

Single-cell landscape reveals NAMPT mediated macrophage polarization that regulate smooth muscle cell phenotypic switch in pulmonary arterial hypertension

Zuoshi Wen, Liujun Jiang, Fangcong Yu, Xiaodong Xu, Mengjia Chen, Jianing Xue, Pengwei Zhu, Zhangquan Ying, Zhoubin Li, Ting Chen

The paper uses scRNA-seq to analyze pulmonary arteries in PAH and healthy donors, identifying NAMPT-mediated macrophage polarization that drives SMC phenotypic switching.

bioRxiv · Jul 4, 2023 · PreprintMolecular Biology