Author

Tom Ellis

Primary ORCID profile (0000-0001-5392-976X · 28 papers)Unclaimed ORCID profile · follow to get notified of new preprints

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Tom EllisiD28 papers · Imperial College London

Biology Disciplines

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Synthetic Biology· 2 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:yeast· 2 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:ecology & biodiversity· 1 Organism:human· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Abdul Muntakim RafiiD· 1 shared Ali R Awan· 1 shared Andrew Roberts· 1 shared Anjuli Ahooja· 1 shared Anna-Maria Boechler· 1 shared Aryan Luthra· 1 shared Benjamin A Blount· 1 shared Bogdana Torbina· 1 shared

Activity by Year

2016-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperSynthetic Biology

Abdul Muntakim RafiORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Yorzoi: Predicting RNA-seq coverage from DNA sequence in yeast

Timon Schneider, Abdul Muntakim Rafi, Cassandra Jensen, Daniella Liao, Yiren Zhao, Carl de Boer, Tom Ellis

Yorzoi predicts RNA-seq coverage for yeast DNA sequences, enabling in-silico testing and design of synthetic DNA constructs.

bioRxiv · Sep 20, 2025 · PreprintSynthetic Biology

Mid-Infrared Spectroscopy Study of Effects of Neonicotinoids on Forager Honey Bee (Apis mellifera) Fat Bodies and Their Connection to Colony Collapse Disorder

Yuzheng Feng, Aryan Luthra, Kaiwen Ding, Yang Yang, Jordan Savage, Xinrui Wei, Roland Moeschter, Sachin Ahuja, Victor Villegas, Bogdana Torbina, Anjuli Ahooja, Tom Ellis, Tom Ellis, Anna-Maria Boechler, Andrew Roberts

This study uses mid-infrared spectroscopy to analyze neonicotinoid effects on honey bee fat bodies, finding changes in protein structure linked to Colony Collapse Disorder.

bioRxiv · Mar 13, 2018 · PreprintPharmacology & Toxicology

Biosynthesis of the Antibiotic Nonribosomal Peptide Penicillin in Baker’s Yeast

Ali R Awan, Benjamin A Blount, David J Bell, Jack C H Ho, Robert M McKiernan, Tom Ellis

This paper engineers baker's yeast to produce penicillin, achieving 50-fold increased productivity and antibacterial activity against Streptococcus.

bioRxiv · Sep 15, 2016Synthetic Biology