Author

X. Fern

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 1

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Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

C. Tataru· 1 shared M. David· 1 shared Q. Pope· 1 shared R. Varma· 1 shared

Activity by Year

2023-2023 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperMicrobiology

C. Tataru

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1 paper

Recent·Most cited

Learning a deep language model for microbiomes: the power of large scale unlabeled microbiome data

Q. Pope, R. Varma, X. Fern, C. Tataru, M. David

This paper trains a self-supervised microbial language model on human gut microbiome data to improve prediction of IBD and diet patterns, showing better performance than baseline methods.

bioRxiv · Jul 17, 2023Microbiology