Author

Xinyu Gu

Shanghai Artificial Intelligence Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Cell Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Research Focus:clustering· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:large language model· 1

Frequent Co-Authors

Daniel W. Feng· 1 shared Kedu Jin· 1 shared Lang Yu· 1 shared Lei BaiiD· 1 shared Mohammed El-KebiriD· 1 shared Qiang GaoiD· 1 shared Qin CheniD· 1 shared Quan Qian· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMolecular Biology

Daniel W. Feng

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Summarizing RNA Structural Ensembles via Maximum Agreement Secondary Structures

Xinyu Gu, Stefan S. Ivanovic, Daniel W. Feng, Mohammed El-Kebir

The paper introduces a framework to summarize RNA structural ensembles by identifying shared motifs and clustering structures, showing it can find conserved scaffolds and motifs across species and transcripts.

Journal of Computational Biology · Sep 15, 2026Peer-reviewedMolecular Biology

SCALE: Scalable Conditional Atlas-Level Endpoint transport for virtual cell perturbation prediction

Shuizhou Chen, Lang Yu, Kedu Jin, Xinjie Mao, Songming Zhang, Xinyu Gu, Sheng Xu, Lei Bai, Quan Qian, Qin Chen, Qiang Gao, Siqi Sun, Zhangyang Gao

A set-aware latent transport model predicts treated cell populations from unpaired controls, keeps perturbation-specific signal in CRISPR, drug and cytokine data, and guided a cytokine choice tested in three donors.

bioRxiv · Sep 3, 2026 · PreprintCell Biology✦ In-depth digest