Author

Siqi Sun

Fudan University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:benchmarking· 1 Assay:CRISPR screen· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:large language model· 1 Assay:multiome· 1

Frequent Co-Authors

Gaoxing Guo· 1 shared Gary Liu· 1 shared Kedu Jin· 1 shared Lang Yu· 1 shared Lei BaiiD· 1 shared Lifeng Qiao· 1 shared Qiang GaoiD· 1 shared Qin CheniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Gaoxing Guo

Mutual co-authors in cluster

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2 papers

Recent·Most cited

SCALE: Scalable Conditional Atlas-Level Endpoint transport for virtual cell perturbation prediction

Shuizhou Chen, Lang Yu, Kedu Jin, Xinjie Mao, Songming Zhang, Xinyu Gu, Sheng Xu, Lei Bai, Quan Qian, Qin Chen, Qiang Gao, Siqi Sun, Zhangyang Gao

A set-aware latent transport model predicts treated cell populations from unpaired controls, keeps perturbation-specific signal in CRISPR, drug and cytokine data, and guided a cytokine choice tested in three donors.

bioRxiv · Sep 3, 2026 · PreprintCell Biology✦ In-depth digest

IntelliFold-2: Surpassing AlphaFold 3 via Architectural Refinement and Structural Consistency

Lifeng Qiao, Yan He, Gary Liu, Gaoxing Guo, Siqi Sun

IntelliFold-2 improves protein structure prediction accuracy and robustness over AlphaFold 3 using architectural refinements and structural consistency, with strong gains in antibody-antigen and protein-ligand interactions.

bioRxiv · Feb 14, 2026 · PreprintBioinformatics