Author

Yiwen Chen

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:GWAS / association mapping· 1 Assay:metabolomics· 1

Frequent Co-Authors

Angela Renee StarkweatheriD· 1 shared Boyang Bai· 1 shared Bryan E. ShepherdiD· 1 shared Daniel Fernandez· 1 shared Debra LyoniD· 1 shared Haozhe Wang· 1 shared Jiexing Wu· 1 shared Jinyuan LiuiD· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperCancer Biology

Angela Renee StarkweatherORCID

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Author profile →

3 papers

Recent·Most cited

Regression-based Modeling of Spearman's Rho for Longitudinal Metabolomics and Mental Wellness in Breast Cancer Patients

Yiwen Chen, Toni T. Gui, Zhuochao Huang, Natalie E. Quach, Shengjia Tu, Jinyuan Liu, Timothy J. Garrett, Angela Renee Starkweather, Debra Lyon, Bryan E. Shepherd, X.M. Tu, Tuo Lin

The paper develops a regression framework to analyze longitudinal metabolomics data and mental wellness in breast cancer patients, identifying metabolites associated with mental health changes over time.

bioRxiv · Apr 16, 2026 · PreprintCancer Biology

RSQ: a statistical method for quantification of isoform-specific structurome using transcriptome-wide structural profiling data

Yunfei Wang, Xiaopeng Zhu, Ming Sun, Yong Chen, Yiwen Chen, Shikui Tu, Boyang Bai, Min Chen, Qi Dai, Haozhe Wang, Michael Q. Zhang, Zhenyu Xuan

RSQ quantifies isoform-specific structurome by modeling read distribution across isoforms and RNA conformations, enabling comparison between conditions and analysis of conformational variation.

bioRxiv · Jun 18, 2016 · PreprintBioinformatics

Exploring functional variation affecting ceRNA regulation in humans

Mulin Jun Li, Jiexing Wu, Peng Jiang, Wei Li, Yun Zhu, Daniel Fernandez, Russell J. H. Ryan, Yiwen Chen, Junwen Wang, Jun S. Liu, X. Shirley Liu

The paper identifies genetic variations affecting ceRNA regulation by analyzing RNA-seq data and GWAS results, revealing new regulatory mechanisms and disease associations.

bioRxiv · Mar 22, 2015 · PreprintGenetics