Author

Zihan Wang

Peking University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 5 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 5 Research Focus:trajectory inference· 5 Assay:scRNA-seq· 4 Approach:deep learning· 3 Research Focus:differential expression· 3 Organism:human· 3 Organism:mouse· 3 Assay:spatial transcriptomics· 3

Frequent Co-Authors

Peijie ZhouiD· 5 shared Zhenyi ZhangiD· 5 shared Qinxue Tian· 3 shared Jiantao SheniD· 2 shared Qiangwei PengiD· 2 shared Xueya Zhou· 2 shared Baichuan Zhou· 1 shared Chao TangiD· 1 shared

Activity by Year

2026-2026 · peak 6/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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5 shared papersBioinformatics

Peijie ZhouORCID

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Author profile →

6 papers

Recent·Most cited

Virtual dynamics of spatiotemporal single-cell interactions

Zhenyi Zhang, Zihan Wang, Qinxue Tian, Han Hou, Jiaqi Han, Jiantao Shen, Yuhao Sun, Xueya Zhou, Qiangwei Peng, Qing Nie, Tiejun Li, Peijie Zhou

CytoBridge reconstructs continuous virtual cell dynamics from sparse spatial transcriptomic data across development, regeneration, and neurodegeneration.

bioRxiv · Nov 6, 2026 · PreprintBioinformatics

Building virtual cell dynamics that evolve with biological measurements

Zhenyi Zhang, Zihan Wang, Qinxue Tian, Baichuan Zhou, Zhou Tianyu, Qing Hua Nie, Peijie Zhou

CellCompass, an agentic AI system, models cell dynamics from single-cell measurements and improves predictions by integrating new biological constraints and experimental data.

bioRxiv · Oct 27, 2026 · PreprintBioinformatics

MOFI reveals dynamic multi-omics coordination during cell fate progression

Jiantao Shen, Zhenyi Zhang, Hao Peng, Qiangwei Peng, Zihan Wang, Rui Liu, Peijie Zhou

MOFI reconstructs continuous cell fate transitions from paired multi-omics snapshots across time, revealing coordinated changes in transcriptomic, chromatin, and protein layers.

bioRxiv · Oct 16, 2026 · PreprintBioinformatics

Reconstructing lineage-constrained gene-program dynamics with PhyloFM

Zihan Wang, Zhenyi Zhang, Xiaojing Yang, Chao Tang, Peijie Zhou

PhyloFM reconstructs continuous cell-fate dynamics using lineage constraints from single-cell data, improving accuracy in multiple biological systems.

bioRxiv · Aug 1, 2026 · PreprintBioinformatics

Non-invasive MRI mapping of tissue-CSF water exchange reveals glymphatic fluid movement in live human cortex

Zihan Wang, Zhiyi Hu, Dengrong Jiang, Jie Song, Yifan Gou, Wen Shi, Jiani Wu, Cuimei Xu, Oluwateniola Akinwale, Kaisha Hazel, George Pottanat, Yulin Ge, Thomas Wısnıewskı, Vivek Srikar Yedavalli, Haris Iqbal Sair, , Hanzhang Lu

This study uses MRI to show glymphatic fluid movement in live human cortex, finding reduced exchange in Alzheimer's disease.

bioRxiv · Mar 26, 2026 · PreprintBioengineering

Benchmarking zero-shot single-cell foundation model embeddings for cellular dynamics reconstruction

Xueya Zhou, Zihan Wang, Yue Ling, Qinxue Tian, Zhenyi Zhang, Yongge Li, Luonan Chen, Peijie Zhou

This study benchmarks zero-shot single-cell foundation model embeddings for cellular dynamics reconstruction and finds they underperform a traditional HVG baseline in capturing complex temporal patterns.

bioRxiv · Mar 12, 2026 · PreprintBioinformatics