bioRxivBioinformaticsPreprint
{Theta}-Net: Achieving Enhanced Phase-Modulated Optical Nanoscopy in silico through a computational 'string of beads' architecture
Shiraz S KaderuppaniD, Eugene Wai Leong WongiD, Anurag SharmaiD, Wai Lok WooiD
Abstract
We present herein a triplet string of concatenated O-Net ( bead) architectures (formulated as discussed in our previous study) which we term {Theta}-Net as a means of improving the viability of generated super-resolved (SR) images in silico. In the present study, we assess the quality of the afore-mentioned SR images with that obtained via other popular frameworks (such as ANNA-PALM, BSRGAN and 3D RCAN). Models developed from our proposed framework result in images which more closely approach the gold standard of the SEM-verified test sample as a means of resolution enhancement for optical microscopical imaging, unlike previous DNNs. In addition, cross-domain (transfer) learning was also utilized to enhance the capabilities of models trained on DIC datasets, where phasic variations are not as prominently manifested as amplitude/intensity differences in the individual pixels [unlike phase contrast microscopy (PCM)]. The present study thus demonstrates the viability of our current multi-paradigm architecture in attaining ultra-resolved images under poor signal-to-noise ratios, while eliminating the need for a priori PSF & OTF information. Due to the wide-scale use of optical microscopy for inspection & quality analysis in various industry sectors, the findings of this study would be anticipated to exhibit a far-ranging impact on several engineering fronts.
- assay: imaging
- research focus: benchmarking
- research focus: dimensionality reduction
- approach: deep learning
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- In silico prediction of cellular organelles from computationally super-resolved (SR) phase-modulated optical micrographs
Shiraz S Kaderuppan, Anurag Sharma, … Wai Lok Woo·bioRxiv·Sep 14, 2025
- Time-lapse Image Super-resolution Neural Network with Reliable Confidence Quantification for Optical Microscopy
Chang Fu Qiao, Shuran Liu, … Qionghai Dai·Nature BiotechnologyPeer-reviewed·Jan 29, 2025
- Physics Augmented U-Net: A High-Frequency Aware Generative Prior for Microscopy
Jathurshan Pradeepkumar, Mithunjha Anandakumar, … Dushan N. Wadduwage·bioRxiv·Dec 1, 2021
- Artificial neural network filters for enhancing 3D optical microscopy images of neurites
Shih-Luen Wang, Seyed Mostafa Mousavi Kahaki, Armen Stepanyants·SPIE Medical Imaging: Image ProcessingPeer-reviewed·Mar 14, 2019
- Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes
J. Chen, H. Sasaki, … H. Shroff·Nature MethodsPeer-reviewed·May 31, 2021
- Zero-shot learning enables instant denoising and super-resolution in optical fluorescence microscopy