Author

A. Amtmann

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:Arabidopsis· 1 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

P. Herzyk· 2 shared A. Marshall-Colon· 1 shared A. Mihnev· 1 shared D.-H. Oh· 1 shared E. A. Armstrong· 1 shared G. Eshel· 1 shared G. Hamilton· 1 shared G. Perrella· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersPlant Biology

P. Herzyk

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3 papers

Recent·Most cited

In-silico analysis of cyanobacteriochrome architectures and spectral diversity

A. Mihnev, A. Amtmann

This paper analyzes cyanobacteriochrome GAF domains to predict their spectral properties using sequence, structure, and domain architecture data.

bioRxiv · Sep 22, 2022 · PreprintBiochemistry

Cell-type specific transcriptional networks in root xylem adjacent cell layers

M. A. Asensi Fabado, E. A. Armstrong, L. Walker, G. Perrella, G. Hamilton, P. Herzyk, M. L. Gifford, A. Amtmann

The paper identifies cell-type specific transcriptional networks in Arabidopsis root xylem-adjacent layers using promoter tagging and chromatin analysis, revealing ZAT6's role in regulating Na+ accumulation.

bioRxiv · Feb 4, 2022 · PreprintPlant Biology

Positive Selection and Heat-Response Transcriptomes Reveal Adaptive Features of the Brassicaceae Desert Model, Anastatica hierochuntica

G. Eshel, N. Duppen, G. Wang, D.-H. Oh, Y. Kazachkova, P. Herzyk, A. Amtmann, M. Gordon, V. Chalifa-Caspi, M. A. Oscar, S. Bar-David, A. Marshall-Colon, M. Dassanayake, S. Barak

This study identifies adaptive features of the desert plant Anastatica hierochuntica by comparing its transcriptome to Arabidopsis thaliana under heat stress, revealing gene selection and expression patterns linked to heat tolerance and desert adaptation.

bioRxiv · May 23, 2021Plant Biology