Author

A. B. Chase

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Biochemistry· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1

Frequent Co-Authors

P. R. Jensen· 3 shared C. Weihe· 2 shared M. N. Muskat· 2 shared A. Bogdanov· 1 shared A. J. O'Donoghue· 1 shared A. Oliver· 1 shared A. Rodriguez-Verdugo· 1 shared C. Hendrickson· 1 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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3 shared papersMicrobiology

P. R. Jensen

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Substrate complexity buffers negative interactions in a synthetic microbial community of leaf litter degraders.

P. Abdoli, C. Vulin, M. Lepiz, A. B. Chase, C. Weihe, A. Rodriguez-Verdugo

This study shows that substrate complexity influences species interactions and coexistence in a synthetic microbial community of leaf litter degraders.

bioRxiv · Dec 23, 2023Microbiology

Metagenomic Data Reveal Type I Polyketide Synthase Distributions Across Biomes

H. W. Singh, K. E. Creamer, A. B. Chase, L. J. Klau, S. Podell, P. R. Jensen

The paper analyzes metagenomic data to classify type I PKS KS domains across biomes, revealing biome-specific distributions and identifying novel biosynthetic potential.

mSystems · Jun 29, 2023Peer-reviewedMicrobiology

Small Molecule in situ Resin Capture - A Compound First Approach to Natural Product Discovery.

A. Bogdanov, M. N. Salib, A. B. Chase, H. Hammerlindl, M. N. Muskat, S. Luedtke, E. Barbosa Da Silva, A. J. O'Donoghue, L. F. Wu, S. J. Altschuler, T. F. Molinski, P. R. Jensen

This paper introduces a compound-first approach to natural product discovery called SMIRC, which captures structurally complex small molecules directly from environments, leading to the discovery of new compounds and classes.

bioRxiv · Mar 2, 2023 · PreprintBiochemistry

High fiber, whole foods dietary intervention alters the human gut microbiome but not fecal short-chain fatty acids

A. Oliver, A. B. Chase, C. Weihe, S. B. Orchanian, S. F. Riedel, C. Hendrickson, M. Lay, J. Massimelli Sewall, J. B. Martiny, K. Whiteson

A two-week high-fiber diet intervention increased gut microbiome diversity and specific fiber-degrading bacteria but did not significantly alter fecal short-chain fatty acid levels.

bioRxiv · Feb 4, 2021Microbiology

Vertical inheritance governs biosynthetic gene cluster evolution and chemical diversification

A. B. Chase, D. Sweeney, M. N. Muskat, D. Guillen-Matus, P. R. Jensen

This study shows that vertical inheritance, not horizontal gene transfer, drives biosynthetic gene cluster (BGC) evolution and chemical diversification in Salinispora marine actinomycetes.

bioRxiv · Dec 19, 2020Microbiology

Sympatric and allopatric differentiation delineates population structure in free-living terrestrial bacteria

A. B. Chase, P. Arevalo, E. L. Brodie, M. F. Polz, U. Karaoz, J. B. H. Martiny

The paper examines genetic differentiation in free-living soil bacteria across a climate gradient, finding evidence for both isolation-by-environment and isolation-by-distance.

bioRxiv · Jun 17, 2019 · PreprintMicrobiology