Author

Alaa E. Hemeida

University of Sadat City

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:deep learning· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

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Mahmoud ElHefnawiiD· 1 shared Mario Flores· 1 shared Mohamed E. HasaniD· 1 shared Salem A. El-aarag· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Mahmoud ElHefnawiORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintSep 29, 2026

PathoBERT: A Hybrid Attention-Based Genomic Language Model for Read-Level Bacterial Pathogenicity Prediction

Salem A. El-aarag, Mario Flores, Mohamed E. Hasan…·Mahmoud ElHefnawi

PathoBERT improves bacterial pathogenicity prediction from short reads by combining a DNABERT encoder with attention-based feature extraction, achieving better performance than existing methods.

DOI 10.64898/2026.09.27.754806

bacteria (other)whole-genome sequencing

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