Author

Ameek Bhalla

Institute for Systems Biology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Organism:Drosophila· 1 Assay:flow cytometry· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Abhay SharmaiD· 1 shared Ajay Suresh AkhadeiD· 1 shared Brett SmithiD· 1 shared Christopher G. LaustediD· 1 shared Clifford RostomilyiD· 1 shared Denise Cooper· 1 shared Gary P. WormseriD· 1 shared Henry R. HamptoniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperGenetics

Abhay SharmaORCID

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2 papers

Recent·Most cited

Multiomics Reveals Compartmentalized Immune Responses and Tissue-Vascular Signatures in Lyme Disease

Clifford Rostomily, Ameek Bhalla, Henry R. Hampton, Lance T. Pflieger, Mary E. Brunkow, Denise Cooper, Christopher G. Lausted, Ajay Suresh Akhade, Brett Smith, Kelsey Scherler, Pamela Troisch, Kai Wang, Gary P. Wormser, Noa Rappaport, Leroy Hood, Naeha Subramanian

This study uses multiomic analysis to identify compartmentalized immune responses and tissue-vascular signatures in Lyme disease, linking local immune processes to systemic symptoms.

bioRxiv · May 27, 2025 · PreprintImmunology

Phenotypic cross-species conservation and cross-generation directionality switching in epigenetic inheritance

Ameek Bhalla, Abhay Sharma

The paper compares transcriptomic data from Drosophila and rodent models of epigenetic inheritance, identifies phenotypic cross-species conservation and directionality shifts, and confirms findings experimentally in flies.

Molecular Ecology · May 7, 2023Peer-reviewedGenetics