Author

Anna Pashkova

Thermo Fisher Scientific (Germany)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3 Systems Biology· 2

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:proteomics· 4 Research Focus:benchmarking· 3 Approach:experimental assay· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

Eugen DamociD· 4 shared Alexander A. MakaroviD· 3 shared Christian Hock· 3 shared Hamish I. StewartiD· 3 shared Tabiwang N. ArreyiD· 3 shared Vlad ZabrouskoviD· 3 shared Eduard V. Denisov· 2 shared J. Petzoldt· 2 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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4 shared papersBiochemistry

Eugen DamocORCID

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Author profile →

5 papers

Recent·Most cited

Evaluation of a prototype Orbitrap Astral Zoom mass spectrometer for quantitative proteomics - Beyond identification lists

Chris Hsu, Nicholas Shulman, Hamish I. Stewart, J. Petzoldt, Anna Pashkova, Deanna L. Plubell, Eduard V. Denisov, Bernd Hagedorn, Nicolaie Eugen Damoc, Brendan MacLean, Philip M. Remes, Jesse D. Canterbury, Alexander Makarov, Christian Hock, Vlad Zabrouskov, , Michael J. MacCoss

This paper evaluates a prototype Orbitrap Astral Zoom mass spectrometer for quantitative proteomics, showing improved performance in ion detection and quantitative precision compared to the standard Orbitrap Astral MS.

Journal of Proteome Research · Oct 22, 2025Peer-reviewedBiochemistry

Narrow window data-independent acquisition on the Orbitrap Astral Mass Spectrometer enables fast and deep coverage of the plasma glycoproteome

Shelley Jager, Martin Zeller, Anna Pashkova, Douwe Schulte, Eugen Damoc, Karli R. Reiding, Alexander A. Makarov, Albert J. R. Heck

The paper evaluates the Orbitrap Astral mass spectrometer for plasma glycoproteome analysis, introducing nGlycoDIA to achieve high sensitivity and throughput.

Nature Communications · Mar 13, 2025Peer-reviewedBiochemistry

Paradigm shift in biomarker translation: a pipeline to generate clinical grade biomarker candidates from DIA-MS discovery

Qin Fu, Manasa Vegesna, Niveda Sundararaman, Eugen Damoc, Tabiwang N. Arrey, Anna Pashkova, Emebet Mengesha, Philip Debbas, Sandy Y. Joung, Dalin Li, Susan C. Cheng, Jonathan G. Braun, Dermot P.B. McGovern, Christopher I. Murray, Yue Xuan, Jennifer E. Van Eyk

This paper introduces TEAQ, a software tool that selects clinical-grade biomarker candidates from DIA-MS data by evaluating protein quantification metrics in a discovery cohort.

Angewandte Chemie · Oct 21, 2024Peer-reviewedBiochemistry

Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass Spectrometer

Noah M. Lancaster, Pavel G. Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke, Caroline Fecher, Andrew J. Smith, Evgenia Shishkova, Tabiwang N. Arrey, Anna Pashkova, Margaret Lea Robinson, Nicholas L. Arp, Jing Fan, Juli Hansen, Andrea Galmozzi, Lia R. Serrano, , Joshua J. Coon

The paper introduces a method using the Orbitrap Astral mass spectrometer with DIA to rapidly analyze phosphoproteomes, detecting over 80,000 phosphorylation sites in mice.

Nature Communications · Aug 15, 2024Peer-reviewedSystems Biology

Narrow-window DIA: Ultra-fast quantitative analysis of comprehensive proteomes with high sequencing depth

Ulises H. Guzmán, Ana Martínez‐Val, Zilu Ye, Eugen Damoc, Tabiwang N. Arrey, Anna Pashkova, Eduard V. Denisov, J. Petzoldt, Amelia C. Peterson, Florian Harking, Ole Østergaard, Hamish I. Stewart, Yue Xuan, Daniel J. Hermanson, Christian Hock, , Jesper Velgaard Olsen

The paper introduces Narrow-window DIA, a fast proteomics method enabling high-throughput and comprehensive proteome analysis with high precision and accuracy.

bioRxiv · Jun 2, 2023 · PreprintSystems Biology