Author

Anton Ogorodnikov

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Chun YeiD· 2 shared David S. LeeiD· 2 shared George C. HartoularosiD· 2 shared Yang SuniD· 2 shared Yun S. SongiD· 2 shared Aidan F. WintersiD· 1 shared Ansgar PoetschiD· 1 shared Bertrand Z. YeungiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Chun YeORCID

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3 papers

Recent·Most cited

Reference-free multiplexed single-cell sequencing identifies genetic modifiers of the human immune response

George C. Hartoularos, Yichen Si, Fan Zhang, Pooja Kathail, David S. Lee, Anton Ogorodnikov, Yang Sun, Yun S. Song, Hyun Min Kang, Chun Ye

The paper introduces clue, a reference-free framework for multiplexed single-cell sequencing to identify genetic modifiers of immune responses using SNP-based clustering and eQTL mapping.

bioRxiv · May 29, 2023 · PreprintGenomics

SCITO-seq: single-cell combinatorial indexed cytometry sequencing

Byungjin Hwang, David S. Lee, Whitney Tamaki, Yang Sun, Anton Ogorodnikov, George C. Hartoularos, Aidan F. Winters, Bertrand Z. Yeung, Kristopher L. Nazor, Yun S. Song, Eric D. Chow, Matthew H. Spitzer, Chun Ye

SCITO-seq enables cost-effective profiling of over 10^5 cells using combinatorial indexing with dsc-seq, demonstrating feasibility in mixed cell lines and human lymphocytes.

Nature Methods · Aug 1, 2021Peer-reviewedGenomics

PCF11 connects alternative polyadenylation to formation and spontaneous regression of neuroblastoma

Anton Ogorodnikov, Michal Levin, Surendra Mohan Tattikota, Sergey V. Tokalov, Mainul Hoque, Denise Scherzinger, Fédérico Marini, Ansgar Poetsch, Harald Binder, Stephan Macher-Göppinger, Hans Christian Probst, Bin Tian, Michael Schaefer, Karl Johannes Lackner, Frank Westermann, Sven Danckwardt

The paper identifies PCF11 as a critical regulator of alternative polyadenylation in neuroblastoma, linking it to cell fate reprogramming and spontaneous tumor regression.

Nature Communications · Dec 10, 2018Peer-reviewedGenomics