Author

B. F. Koop

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 5 Ecology· 1

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 4 Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:comparative / phylogenetic analysis· 2 Research Focus:development & morphogenesis· 2 Research Focus:gene regulatory network inference· 2

Frequent Co-Authors

E. B. Rondeau· 3 shared L. Bernatchez· 3 shared E. Rondeau· 2 shared Q. Rougemont· 2 shared S. R. Sandve· 2 shared A. Abadia-Cardoso· 1 shared A. G. Hernandez· 1 shared A. Herpin· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersEvolutionary Biology

E. B. Rondeau

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Author profile →

6 papers

Recent·Most cited

Allele surfing causes maladaptation in a Pacific salmon of conservation concern

Q. Rougemont, t. leroy, E. Rondeau, B. F. Koop, L. Bernatchez

This study shows that allele surfing during postglacial expansion in Coho salmon increases deleterious mutation load and reduces selection efficacy, influenced by population size, recombination rates, and chromosomal inheritance.

bioRxiv · Nov 10, 2022 · PreprintEvolutionary Biology

Effects of ancient anthropogenic clam gardens on the growth, survival, and transcriptome of Pacific littleneck clams (Leukoma staminea)

M. R. Raap, H. J. Gurney-Smith, S. E. Dudas, C. M. Pearce, J. S. Leong, B. J. G. Sutherland, B. F. Koop

This study examines the effects of ancient clam gardens on clam growth, survival, and transcriptome, finding minor transcriptomic responses but strong survival associations with sediment characteristics.

bioRxiv · Sep 9, 2022Ecology

Long distance migration is a major factor driving local adaptation at continental scale in Coho Salmon

Q. Rougemont, A. Xuereb, X. Dallaire, J.-S. Moore, E. Normandeau, E. B. Rondeau, R. Withler, D. Van Doornik, P. Crane, K. Naish, J.-C. Garza, T. Beacham, B. F. Koop, L. Bernatchez

This study identifies long-distance migration as a key driver of local adaptation in Coho Salmon across North America, revealing genetic associations with migration and altitude.

bioRxiv · Nov 22, 2021Evolutionary Biology

Comparative regulomics reveals pervasive selection on gene dosage following whole genome duplication

G. B. Gillard, L. Groenvold, L. L. Roesaeg, M. M. Holen, O. Monsen, B. F. Koop, E. B. Rondeau, M. K. Gundappa, J. Mendoza, D. Macqueen, R. V. Rohlfs, S. R. Sandve, T. R. Hvidsten

The paper uses comparative phylogenetic analysis of transcriptomic data to show pervasive expression evolution in ohnologs following salmonid WGD, driven by regulatory divergence and gene dosage shifts.

bioRxiv · Jul 20, 2020Evolutionary Biology

The rise and fall of the ancient northern pike master sex determining gene

Q. Pan, R. Feron, E. Jouanno, H. Darras, A. Herpin, B. F. Koop, E. Rondeau, F. W. Goetz, W. A. Larson, L. Bernatchez, M. Tringali, S. S. Curran, E. Saillant, G. P. J. Denys, F. A. von Hippel, , Y. Guiguen

The paper traces the evolution of sex determination in northern pike, revealing an ancient origin of the master sex-determining gene and recent transitions including Y-chromosome loss.

bioRxiv · May 31, 2020Evolutionary Biology

Sex-dependent dominance maintains migration supergene in rainbow trout

D. E. Pearse, N. J. Barson, T. Nome, G. Gao, M. A. Campbell, A. Abadia-Cardoso, E. C. Anderson, D. E. Rundio, T. H. Williams, K. A. Naish, T. Moen, S. Liu, M. Kent, D. R. Minkley, E. B. Rondeau, , S. Lien

The paper identifies a supergene in rainbow trout that uses sex-dependent dominance to resolve sexual conflict, protecting polygenic variation without the drawbacks of sex chromosomes.

bioRxiv · Dec 22, 2018Evolutionary Biology